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  All conferences / 2005 / PACT-05 / Conference program Russian 


“Parallel Computing Technologies”
Program of the Conference

Monday, September 5

Tutorials 9:00–18:00
An Introduction to Genomics and Biomedical Applications for Parallel Computing
Thomas L. Casavant,
Center for Bioinformatics, University of Iowa, USA
9:00–12:20
This will be a half-day tutorial on Parallel Computing-related issues in Bioinformatics and Computational Biology (BCB). The target audience will be scientifically-literate computational researchers who are not currently engaged in BCB. About half of the tutorial will be an overview of a representative collection of basic life science and medical research problems contemporary to this rapidly expanding field. The second half of the tutorial will focus attention on some of the problems in BCB that are most in need of high-performance computing and networking. The tutorial will provide a basic level of introduction to these problems, and is intended to serve to introduce this area of inter-disciplinary research to people interested in becoming partially involved in applying their backgrounds in Parallel Computing to BCB.
Coffee break 10:30–10:50
Lunch 12:20–14:00
Fine-grained parallelism in spatial dynamics simulation
Olga L. Bandman,
Supercomputer Software Department, ICM&MG SB RAS, RUSSIA
14:00–17:20
The concept of fine-grained parallelism is considered in the context of its application in simulation of spatially distributed processes. It comprises models, algorithms and computing technologies exhibiting two following properties: 1) spatial parallelism (at any discrete time the next values of the spatial function in all points of the space are allowed to be computed in parallel), and 2) locality (the computation for any point uses as variables the values of the function in its fixed vicinity). The scope of fine-grain spatial dynamics models is classified and illustrated by examples, the domain of application of each class being specified. Theoretical background of fine-grained parallel computations is given in brief. Computational properties (accuracy, stability, coarse-grained parallelization efficiency) are discussed, and methods of fine-grained algorithms synthesis are presented and shown at work by examples.
Coffee break 15:30–15:50
Welcome party 19:00

Tuesday, September 6

Opening session10:00–10:15
V. Shaidurov
Director of the Institute of Computational Modeling RAS
10:00–10:10
V. Malyshkin
Program Committee Chairman
10:10–10:15
Invited talk 10:15–11:00
Blue Gene/L and Petascale Computing
Carl G. Tengwall, Blue Gene Solutions Executive IBM Strategic Growth Business EMEA (invited paper)
10:15–11:00
Coffee break 11:00–11:30
Fine-grain computations
Chairman Stefania Bandini
11:30–13:00
Composing Fine-Grained Parallel Algorithms for Spatial Dynamics Simulation
Olga L. Bandman
11:30–12:00
Optimal Behavior of a Moving Creature in the Cellular Automata Model
M. Halbach, R. Hoffmann
12:00–12:20
Associative Parallel Algorithm for Dynamic Reconstruction of a Minimum Spanning Tree after Deletion of a Vertex
A. S. Nepomniaschaya
12:20–12:40
Development of Predictive TFRC with Neural Network
Sung-goo Yoo, Kil To Chong, Hyong-suk Kim
12:40–13:00
Lunch 13:00–14:30
Applications
Chairman Bernard Roux
14:30–16:00
XenoCluster: A Grid Computing Approach to Finding Ancient Evolutionary Genetic Anomalies
J. D. Walters, T. L. Casavant, J. P. Robinson, T. B. Bair, T. A. Braun, T. E. Scheetz
14:30–15:00
RAxML-OMP: An Efficient Program for Phylogenetic Inference on SMPs
A. Stamatakis, M. Ott, T. Ludwig
15:00–15:30
A Parallel Version for the Propagation Algorithm
M. B. Castro, L. Baldo, L. G. Fernandes, M. Raeder, P. Velho
15:30–16:00
Coffee break 16:00–16:30
Programming environment
Chairman M. Raynal
16:30–18:00
OpenTS: An Outline of Dynamic Parallelization approach
S. Abramov, A. Adamovich, A. Inyukhin, A. Moskovsky, V. Roganov, E. Shevchuk, Yu. Shevchuk, A. Vodomerov
16:30–17:00
ParC#: Parallel Computing with C# in. Net 
J. F. Ferreira, J. L. Sobral
17:00–17:30
A Model for Designing and Implementing Parallel Applications using Extensible Architectural Skeletons
M. M. Akon, D. Goswami, Hon Fung Li
17:30–18:00

Wednesday, September 7

Theory of programming
Chairman Valeri A. Sokolov
9:30–11:00
Early-Stopping k-set Agreement in Synchronous Systems Prone to any Number of Process Crashes
P. R. Parvedy, M. Raynal, C. Travers
9:30–10:00
Allowing Atomic Objects to Coexist with Sequentially Consistent Objects
M. Raynal, M. Roy 
10:00–10:30
Information Flow Analysis for VHDL
T. K. Tolstrup, F. Nielson, H. R. Nielson
10:30–10:50
Coffee break 10:50–11:30
Grid computing
Chairman Thomas Ludwig
11:30–13:00
Performance Analysis of Applying Replica Selection Technology for Data Grid Environments
Chao-Tung Yang, Chun-Hsiang Chen, Kuan-Ching Li, Ching-Hsien Hsu 
11:30–12:00
IBM Technologies for High Performance Computing (invited paper)
A. Pershikov
12:00–12:30
Experimenting with a Multi-Agent E-Commerce Environment
C. Badica, M. Ganzha, M. Paprzycki, A. Pirvanescu
12:30–13:00
Lunch 13:00–14:30
Models Chairman Irina Virbitskaite 14:30–16:00
Situated Agents Interaction: Coordinated Change of State for Adjacent Agents
S. Bandini, S. Manzoni, G. Vizzari
14:30–15:00
Similarity of Generalized Resources in Petri Nets
Vladimir A. Bashkin, Irina A. Lomazova
15:00–15:30
Timed Equivalences for Timed Event Structures
M. V. Andreeva, I. B. Virbitskaite
15:30–16:00
Coffee break 16:00–16:30
Protocols
Chairman Sergey Abramov
16:30–17:15
On Evaluating the Performance of Security Protocols
C. Bodei, M. Buchholtz, M. Curti, P. Degano, F. Nielson, H. R. Nielson, C. Priami
16:30–17:00
An approach to the Implementation of Dynamical Priorities Method
V. A. Sokolov, E. A. Timofeev
17:00–17:30
Short papers & demonstrations 17:30–18:20
Real-Time Event Structures and Scott Domains
R. S. Dubtsov
#1
Parallelization Techniques for Multidimensional Hypercomplex Discrete Fourier Transform
M. Chicheva, M. Aliev, A. Yershov
#2
The Parallel Implementation of the Algorithm Solution of Model for Two-phase Cluster in Liquids
V. D. Korneev, V. A. Vshivkov, G. G. Lazareva, V. K. Kedrinskii
#4
Neural Network Approach for Parallel Construction of Adaptive Meshes
O. Nechaeva
#5
Clustering Multiple and Cooperative Instances of Computational Intensive Software Tools
D. Petcu, M. Paprzycki, M. Ganzha
#6
NumGrid Middleware: MPI Support for Computational Grids
D. Fougere, M. Gorodnichev, N. Malyshkin, V. Malyshkin, A. Merkulov, B. Roux
#7

Thursday, September 8

Social program 10:00–18:00
Conference dinner 19:00

Friday, September 9

Optimization
Chairman Joao Luis Sobral
9:30–11:00
Planning of Parallel Abstract Programs as Boolean Satisfiability
G. A. Oparin, A. P. Novopashin
9:30–9:55
Efficient Communication Scheduling Methods for Irregular Data Redistribution in Parallelizing Compilers
Shih-Chang Chen, Ching-Hsien Hsu, Chao-Yang Lan, Chao-Tung Yang, Kuan-Ching Li 
9:55–10:15
Minimizing Hotspot Delay by Fully Utilizing the Link Bandwidth on 2D Mesh with Virtual Cut-Through Switching
MinHwan Ok, Myong-soon Park
10:15–10:35
A Shape Optimizing Load Distribution Heuristic for Parallel Adaptive FEM Computations
S. Schamberger
10:35–11:00
Coffee break 11:00–11:30
Fine-grain applications
Chairman Irina Lomazova
11:30–13:00
Systolic Routing in an Optical Butterfly
R. T. Honkanen
11:30–11:50
Feasibility of the Circularly Connected Analog CNN Cell Array-based Viterbi Decoder
Hongrak Son, Hyunjung Kim, Hyongsuk Kim, and Kil To Chong
11:50–12:10
The Use of Vertical Processing Principle in Parallel Image Processing on Conventional MIMD Computers
E. V. Rusin
12:10–12:30
Parallel Implementation of Back-propagation Neural Network Software on SMP Computers
V. G. Tsaregorodtsev
12:30–12:50
Lunch 13:00–14:30
Tools
Chairman Giancarlo Alfonsi
14:30–16:00
A Practical Tool for Detecting Races in OpenMP Programs
Young-Joo Kim, Mi-Young Park, So-Hee Park, Yong-Kee Jun 
14:30–15:00
Comprehensive Cache Inspection with Hardware Monitors
J. Tao, J. Jeitner, C. Trinitis, Wolfgang Karl, J. Weidendorfer
15:00–15:20
A Fast Technique for Constructing Evolutionary Tree with the Application of Compact Sets
Kun-Ming Yu, Yu-Wai Chang, YaoHua Yang, Jiayi Zhou, Chun-Yuan Lin, Chuan Yi Tang
15:20–15:40
Online Virtual Disk Migration with Performance Guarantees in a Shared Storage Environment
Yong Feng, Yan-yuan Zhang, Rui-yong Jia, Xiao Zhang
15:40–16:00
Coffee break 16:00–16:30
Numerical algorithms
Chairman V. Shaidurov
16:30–17:40
A Multigrid Parallel Program for Protoplanetary Disc Simulation
A. Snytnikov, V. Vshivkov
16:30–17:00
An Implementation of the Matrix Multiplication Algorithm SUMMA in mpF
A. Kalinov, I. Ledovskikh, M. Posypkin, Z. Levchenko, V. Chizhov
17:00–17:20
A Parallel Computational Code for the Eduction of Coherent Structures of Turbulence in Fluid Dynamics
G. Alfonsi, L. Primavera
17:20–17:40
Closing of the conference 17:40
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